{ "_id": "6a227726cd65a98ecbd4b42e", "Package": "ivd", "Type": "Package", "Title": "\"Individual Variance Detection\"", "Version": "1.0.0.9000", "Authors@R": "c(\nperson(given = \"Philippe\",\nfamily = \"Rast\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"rast.ph@gmail.com\",\ncomment = c(ORCID = \"0000-0003-3630-6629\")),\nperson(given = \"Marwin\",\nfamily = \"Carmo\",\nrole = \"aut\",\nemail = \"mmcarmo@ucdavis.edu\")\n)", "Maintainer": "Philippe Rast ", "Description": "Fit mixed-effects location scale models with\nspike-and-slab priors on the location random effects to\nidentify units with unusual residual variances. The method is\ndescribed in detail in Carmo, Williams and Rast (2025)\n.", "License": "GPL (>=3)", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "BugReports": "https://github.com/consistentlyBetter/ivd/issues", "Config/pak/sysreqs": "libglpk-dev make libxml2-dev", "Repository": "https://consistentlybetter.r-universe.dev", "Date/Publication": "2026-02-05 21:52:05 UTC", "RemoteUrl": "https://github.com/consistentlybetter/ivd", "RemoteRef": "HEAD", "RemoteSha": "38ef867f98a5003d903bbbcf90e6a7f1c343eea7", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-05 07:09:15 UTC", "User": "root" }, "Author": "Philippe Rast [aut, cre, cph] (ORCID:\n),\nMarwin Carmo [aut]", "MD5sum": "5b4c2d86d80591ababd47aad48255da5", "_user": "consistentlybetter", "_type": "src", "_file": "ivd_1.0.0.9000.tar.gz", "_fileid": "f079ccea92988f5d0b51b3ec4d5f1a5add4260c4d6a4884cae88807d096c5a4f", "_filesize": 249849, "_sha256": "f079ccea92988f5d0b51b3ec4d5f1a5add4260c4d6a4884cae88807d096c5a4f", "_created": "2026-06-05T07:09:15.000Z", "_published": "2026-06-05T07:13:42.105Z", "_distro": "noble", "_jobs": [ { "job": 79680988149, "time": 221, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7430876197" }, { "job": 79680988175, "time": 224, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7430876935" }, { "job": 79680988210, "time": 204, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7430866406" }, { "job": 79680988153, "time": 195, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7430860885" }, { "job": 79680552715, "time": 209, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7430818252" }, { "job": 79680988229, "time": 144, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7430856070" }, { "job": 79680988152, "time": 177, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7430865180" }, { "job": 79680988162, "time": 170, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7430863611" }, { "job": 79680988178, "time": 200, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7430871024" } ], "_buildurl": "https://github.com/r-universe/consistentlybetter/actions/runs/27000786559", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/consistentlybetter/ivd", "_commit": { "id": "38ef867f98a5003d903bbbcf90e6a7f1c343eea7", "author": "Philippe Rast ", "committer": "GitHub ", "message": "Merge pull request #19 from marwincarmo/features\n\nJOSS paper", "time": 1770328325 }, "_maintainer": { "name": "Philippe Rast", "email": "rast.ph@gmail.com", "login": "ph-rast", "description": "", "uuid": 8701320, "orcid": "0000-0003-3630-6629" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0", "role": "Depends" }, { "package": "nimble", "version": ">= 1.1.0", "role": "Imports" }, { "package": "coda", "version": ">= 0.19.4", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "patchwork", "role": "Imports" }, { "package": "future", "role": "Imports" }, { "package": "future.apply", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "rstan", "role": "Imports" }, { "package": "ggrepel", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "consistentlybetter", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-35", "n": 4 }, { "week": "2025-47", "n": 2 }, { "week": "2025-48", "n": 6 }, { "week": "2025-49", "n": 2 }, { "week": "2026-06", "n": 1 } ], "_tags": [], "_stars": 2, "_contributors": [ { "user": "ph-rast", "count": 136, "uuid": 8701320 }, { "user": "marwincarmo", "count": 43, "uuid": 26146820 } ], "_userbio": { "uuid": 145166984, "type": "organization", "name": "consistentlyBetter" }, "_downloads": { "count": 133, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ivd" }, "_devurl": "https://github.com/consistentlybetter/ivd", "_searchresults": 19, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/ivd.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/consistentlybetter/ivd", "_realowner": "consistentlybetter", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2025-12-11" } ], "_exports": [ "build_ivd_model", "codaplot", "ivd", "run_MCMC_compiled_model" ], "_datasets": [ { "name": "saeb", "title": "Basic Education Evaluation System (Saeb) -2021", "object": "saeb", "class": [ "data.table", "data.frame" ], "fields": [ "school_id", "public", "student_ses", "math_proficiency", "location" ], "rows": 11386, "table": true, "tojson": true } ], "_help": [ { "page": "dot-require_suggest", "title": "Helper to check for suggested package", "topics": [ ".require_suggest" ] }, { "page": "build_ivd_model", "title": "Build and compile NIMBLE model and MCMC once This function is exported for use in 'future' and is not meant to be called by user.", "topics": [ "build_ivd_model" ] }, { "page": "codaplot", "title": "Traceplot from the coda package", "topics": [ "codaplot" ] }, { "page": "ivd", "title": "Main function to set up and run parallel MCMC using nimble and future. 'ivd' computes a mixed effects location and scale model with Spike and Slab regularization on the scale random effects.", "topics": [ "ivd" ] }, { "page": "plot.ivd", "title": "Plot method for ivd objects", "topics": [ "plot.ivd" ] }, { "page": "run_MCMC_compiled_model", "title": "Run MCMC on an already compiled model Exposed but internal function for future()", "topics": [ "run_MCMC_compiled_model" ] }, { "page": "saeb", "title": "Basic Education Evaluation System (Saeb) -2021", "topics": [ "saeb" ] }, { "page": "summary.ivd", "title": "Summary of posterior samples", "topics": [ "summary.ivd" ] } ], "_pkglogo": "https://github.com/consistentlybetter/ivd/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/consistentlybetter/ivd/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "BH", "callr", "checkmate", "cli", "coda", "codetools", "cpp11", "desc", "digest", "distributional", "farver", "future", "future.apply", "generics", "ggplot2", "ggrepel", "globals", "glue", "gridExtra", "gtable", "igraph", "inline", "isoband", "labeling", "lattice", "lifecycle", "listenv", "loo", "magrittr", "Matrix", "matrixStats", "nimble", "numDeriv", "parallelly", "patchwork", "pillar", "pkgbuild", "pkgconfig", "posterior", "pracma", "processx", "ps", "QuickJSR", "R6", "RColorBrewer", "Rcpp", "RcppEigen", "RcppParallel", "rlang", "rstan", "S7", "scales", "StanHeaders", "tensorA", "tibble", "utf8", "vctrs", "viridisLite", "withr" ], "_score": 3.9777236052888476, "_indexed": true, "_nocasepkg": "ivd", "_universes": [ "consistentlybetter", "ph-rast" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0.9000", "date": "2026-06-05T07:11:52.000Z", "distro": "noble", "commit": "38ef867f98a5003d903bbbcf90e6a7f1c343eea7", "fileid": "da90852cccaf6eaee75e8083f04fdc1da7d3b83652c47f0b596400ec678f55d9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/consistentlybetter/actions/runs/27000786559" }, { "r": "4.6.0", "os": "linux", "version": "1.0.0.9000", "date": "2026-06-05T07:11:54.000Z", "distro": "noble", "commit": "38ef867f98a5003d903bbbcf90e6a7f1c343eea7", "fileid": "b578683965bbbb5d04d74ac595b95a128e65864403809f4c4d918a3d59a174e9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/consistentlybetter/actions/runs/27000786559" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0.9000", "date": "2026-06-05T07:11:39.000Z", "commit": "38ef867f98a5003d903bbbcf90e6a7f1c343eea7", "fileid": "f61143e2068868242ef5a0a35fbf17285cec5e08875d2eafce169f87b8db4265", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/consistentlybetter/actions/runs/27000786559" }, { "r": "4.6.0", "os": "mac", "version": "1.0.0.9000", "date": "2026-06-05T07:11:20.000Z", "commit": "38ef867f98a5003d903bbbcf90e6a7f1c343eea7", "fileid": "fb33c3f39e9fe2fb39c6544ef8ba0bcb714abe2659003f693b7c32c4eba3ef5d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/consistentlybetter/actions/runs/27000786559" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0.9000", "date": "2026-06-05T07:11:58.000Z", "commit": "38ef867f98a5003d903bbbcf90e6a7f1c343eea7", "fileid": "b4475ead86e6715bd911e33ffb6d13b1d0fa62a16c2f28bbef0a26ad97fcf3dd", "status": "success", "buildurl": "https://github.com/r-universe/consistentlybetter/actions/runs/27000786559" }, { "r": "4.7.0", "os": "win", "version": "1.0.0.9000", "date": "2026-06-05T07:11:09.000Z", "commit": "38ef867f98a5003d903bbbcf90e6a7f1c343eea7", "fileid": "e3e39363c8339ab87a04d9ac495e74677f01d76731a688f86ff03daa4b4e29c4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/consistentlybetter/actions/runs/27000786559" }, { "r": "4.5.3", "os": "win", "version": "1.0.0.9000", "date": "2026-06-05T07:10:49.000Z", "commit": "38ef867f98a5003d903bbbcf90e6a7f1c343eea7", "fileid": "b17a525f7b67f3b724dc296756c378f06975f430f5d69daf463bcdad40930ebb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/consistentlybetter/actions/runs/27000786559" }, { "r": "4.6.0", "os": "win", "version": "1.0.0.9000", "date": "2026-06-05T07:11:05.000Z", "commit": "38ef867f98a5003d903bbbcf90e6a7f1c343eea7", "fileid": "9c871a13251dd91a9cc24dc658815b0fc176ffb816d5218b0f49194c01e634d3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/consistentlybetter/actions/runs/27000786559" } ] }